species:   Scscl
pid:       PID1682
parent:    Ssc-milR-158
paralog:   
locus:     NW_001820830.1:1140223-1140303
matures:   ['UCGUUGACCUUAUUGAGAAGG', 'GUUUUAGAGAGGUUUGGGGGG']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820830.1:1140223-1140303

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

          **********************                 **********************          
GGAUUGAGCAUCGUUGACCUUAUUGAGAAGGUUGCUGGCCUUGUCGGAGAGUGUUUUAGAGAGGUUUGGGGGGCUUGGGGU
.....((((.((.(.((((((.((((((.(.((.(((((...))))).)).).)))))).)))))).).)).)))).....
----------UCGUUGACCUUAUUGAGAAGG-------------------------------------------------- l=21 a=0 c
----------------------------------------------------GUUUUAGAGAGGUUUGGGGGG-------- l=21 a=0 c*
---------------------------------------------------UGUUUUAGAGAGGUUUGGGG---------- l=20 a=1 ma
------------GUUGACCUUAUUGAGAAGGU------------------------------------------------- l=20 a=0 ma*

---------------------------------------------------UGUUUUAGAGAGGUUUGGGG---------- l=20 a=1 (ma)
-------------------------------------------UCGGAGAGUGUUUUAGAGAGG----------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-111
